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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
68
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
147
Transcription
68
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
September, 2020
17
December, 2017
7
August, 2020
6
February, 2021
5
September, 2017
4
November, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
309
bam
293
bigWig
253
fastq
156
tsv
143
bed narrowPeak
80
zippedFastqFolder
69
bigBed narrowPeak
21
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
253
Homo sapiens
Biosample type
236
primary cell
17
in vitro differentiated cells
Organ
463
pancreas
408
liver
253
epithelium
92
connective tissue
50
blood
50
bodily fluid
39
adipose tissue
27
embryo
24
spleen
18
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
184
AMP
69
HPAP
Genome assembly (visualization)
177
GRCh38
169
hg19
Lab
184
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
253 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic delta cell
11
+ See 5 more…
in vitro differentiated cells
hepatocyte
13
Hepatic endoderm
4
See all biosamples
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