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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
39
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
162
DNA accessibility
121
Transcription
39
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
RNA binding protein
3
transcription factor
Date released
128
August, 2021
80
June, 2019
47
September, 2023
22
April, 2019
15
October, 2019
14
May, 2023
11
July, 2019
8
February, 2021
4
May, 2019
3
December, 2019
Available data
173
bed narrowPeak
126
bam
117
bigWig
101
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
332
Homo sapiens
Biosample type
298
tissue
34
primary cell
cell line
Organ
846
pancreas
674
connective tissue
486
adipose tissue
438
epithelium
386
liver
332
kidney
283
brain
281
heart
165
vasculature
160
blood vessel
159
bone element
122
limb
96
musculature of body
74
artery
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
285
AMP
47
KPMP
Genome assembly (visualization)
191
GRCh38
115
hg19
Lab
143
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
6
inconsistent ontology term
target.investigated_as!
RNA binding protein
biosample_type!
cell line
BIOSAMPLE
ASSAY
332 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
26
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
1
9
1
kidney epithelial cell
1
1
4
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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