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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
59
December, 2017
50
May, 2020
48
August, 2017
30
November, 2018
21
August, 2021
5
October, 2019
Available data
453
bam
395
fastq
376
bigWig
357
bed narrowPeak
297
bigBed narrowPeak
86
tagAlign
54
bed broadPeak
54
bigBed broadPeak
6
bed bed3+
2
tar
Organism
494
Homo sapiens
Biosample type
324
cell line
153
tissue
13
in vitro differentiated cells
4
primary cell
Organ
494
liver
215
brain
209
pancreas
143
connective tissue
123
heart
121
epithelium
97
vasculature
95
blood vessel
68
adipose tissue
66
limb
50
blood
50
bodily fluid
49
kidney
39
musculature of body
35
nerve
33
artery
22
embryo
20
spleen
17
vein
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
494
AMP
Genome assembly (visualization)
374
hg19
309
GRCh38
Lab
477
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
494 results
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Clear Filters
ChIP-seq
cell line
HepG2
324
tissue
liver
144
right lobe of liver
9
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
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