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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
30
DNA binding
4
DNA accessibility
1
DNA methylation
1
Transcription
Target of assay
49
transcription factor
RNA binding protein
16
recombinant protein
5
chromatin remodeller
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
40
May, 2022
34
August, 2021
34
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
35
bam
34
fastq
33
bed narrowPeak
33
bigWig
32
bigBed narrowPeak
4
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
37
Homo sapiens
Biosample type
29
cell line
8
tissue
Organ
456
connective tissue
387
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
39
pancreas
37
liver
32
epithelium
13
blood
13
bodily fluid
9
spleen
8
kidney
8
skeleton
6
limb
2
brain
Project
37
AMP
Genome assembly (visualization)
34
GRCh38
32
hg19
Lab
37
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
cell line
HepG2
26
1
1
1
tissue
liver
4
2
1
right lobe of liver
1
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