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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
total RNA-seq
80
ChIP-seq
3
DNase-seq
1
WGBS
1
pCHi-C
Assay category
143
Transcription
80
DNA binding
3
DNA accessibility
1
DNA methylation
Target of assay
49
transcription factor
27
histone
27
histone modification
27
narrow histone mark
23
control
RNA binding protein
16
recombinant protein
5
chromatin remodeller
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
40
May, 2022
34
August, 2021
34
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
227
bam
203
bigWig
144
tsv
59
bed narrowPeak
50
tagAlign
34
fastq
32
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
228
Homo sapiens
Biosample type
200
tissue
28
cell line
Organ
228
liver
13
blood
13
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
228
AMP
Genome assembly (visualization)
200
hg19
195
GRCh38
Lab
228
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
228 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
pCHi-C
tissue
liver
143
54
2
right lobe of liver
1
cell line
HepG2
26
1
1
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