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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
pCHi-C
Assay category
35
DNA binding
14
Transcription
13
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
42
October, 2019
19
April, 2020
1
February, 2020
1
March, 2020
Available data
42
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
62
Homo sapiens
Biosample type
63
tissue
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
351
kidney
347
heart
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
19
LungMap
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
44
AMP-T2D consortium
19
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
tibial nerve
35
5
2
1
lung
10
9
1
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