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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
24
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
49
DNA accessibility
24
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
May, 2019
1
March, 2020
Available data
92
bam
84
bigWig
73
bed narrowPeak
59
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
132
Homo sapiens
Biosample type
66
tissue
64
cell line
2
primary cell
Organ
884
pancreas
639
connective tissue
625
liver
486
epithelium
462
adipose tissue
362
heart
339
kidney
252
brain
209
vasculature
205
blood vessel
159
bone element
131
artery
105
limb
90
musculature of body
59
eye
53
blood
53
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
127
GRCh38
92
hg19
Lab
132
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
control
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
2
2
tibial artery
1
1
18
2
pulmonary artery
2
bladder (urinary bladder)
1
cell line
smooth muscle cell of the coronary artery
52
8
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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