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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
38
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
70
DNA binding
38
DNA accessibility
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
RNA binding protein
3
transcription factor
Date released
47
May, 2019
35
February, 2023
24
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
March, 2020
Available data
97
bed narrowPeak
84
bam
67
bigWig
59
bigBed narrowPeak
14
tsv
5
bed bed3+
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
125
Homo sapiens
Biosample type
125
tissue
66
cell line
25
primary cell
Organ
539
connective tissue
480
adipose tissue
477
pancreas
356
liver
276
heart
230
kidney
229
brain
158
bone element
125
blood vessel
125
vasculature
86
limb
68
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
97
GRCh38
62
hg19
Lab
125
AMP-T2D consortium
target.investigated_as!
RNA binding protein
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
4
36
1
tibial artery
23
1
1
aorta
13
1
4
2
1
1
thoracic aorta
15
1
2
ascending aorta
15
2
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