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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
31
histone
31
histone modification
25
transcription factor
16
narrow histone mark
broad histone mark
13
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
13
August, 2017
10
November, 2017
6
December, 2017
4
November, 2018
1
February, 2018
1
October, 2018
Available data
35
bam
35
bigWig
35
fastq
34
bed narrowPeak
17
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
5
tagAlign
Organism
35
Homo sapiens
Biosample type
14
cell line
12
in vitro differentiated cells
5
primary cell
3
tissue
1
stem cell
Organ
15
liver
6
connective tissue
6
pancreas
5
epithelium
2
embryo
Project
35
AMP
Genome assembly (visualization)
35
hg19
33
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
35
inconsistent control read length
6
inconsistent control run_type
2
inconsistent assembly
target.investigated_as!
RNA binding protein
broad histone mark
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
cell line
HepG2
14
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
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primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
body of pancreas
1
liver
1
pancreas
1
stem cell
hESC
1
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