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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
131
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
131
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
RNA binding protein
3
chromatin remodeller
Date released
117
May, 2021
44
August, 2017
35
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
248
bam
216
bigWig
131
tsv
104
fastq
89
bed narrowPeak
26
tagAlign
21
bed bed3+
8
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
327
Homo sapiens
Biosample type
2431
tissue
956
primary cell
578
cell line
327
in vitro differentiated cells
9
stem cell
Organ
73
connective tissue
25
embryo
15
epithelium
6
liver
3
pancreas
1
adipose tissue
1
heart
Project
327
AMP
Genome assembly (visualization)
255
hg19
222
GRCh38
4
hg18
Lab
288
AMP-T2D consortium
32
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
327 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
43
8
1
1
embryonic stem cell
7
24
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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