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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
57
ATAC-seq
19
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
120
Transcription
61
DNA accessibility
19
DNA binding
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
216
February, 2021
43
February, 2023
12
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
May, 2021
Available data
153
bam
128
bigWig
116
tsv
88
txt
67
bed narrowPeak
10
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
285
Homo sapiens
Biosample type
216
tissue
66
cell line
3
primary cell
Organ
859
pancreas
691
liver
630
connective tissue
472
epithelium
466
adipose tissue
336
kidney
325
heart
213
brain
186
vasculature
181
blood vessel
159
bone element
126
artery
88
limb
76
musculature of body
60
eye
59
blood
59
bodily fluid
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
284
AMP
1
T1D
Genome assembly (visualization)
179
GRCh38
148
hg19
Lab
284
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
285 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
36
4
2
tibial artery
1
1
9
2
acetabular part of hip bone
1
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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