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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
20
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
20
DNA binding
Target of assay
21
histone
21
histone modification
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
13
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
87
bam
70
bigWig
59
bed narrowPeak
58
tsv
10
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
66
cell line
59
tissue
2
primary cell
Organ
859
pancreas
691
liver
630
connective tissue
472
epithelium
466
adipose tissue
336
kidney
325
heart
213
brain
186
vasculature
181
blood vessel
159
bone element
126
artery
88
limb
76
musculature of body
60
eye
59
blood
59
bodily fluid
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
113
GRCh38
78
hg19
Lab
127
AMP-T2D consortium
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
127 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
4
2
tibial artery
1
1
9
2
pulmonary artery
2
islet of Langerhans
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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