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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
28
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
15
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
74
bam
53
bigWig
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
19
tagAlign
8
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
96
Homo sapiens
Biosample type
81
tissue
15
primary cell
Organ
786
pancreas
631
liver
596
connective tissue
454
adipose tissue
423
epithelium
321
kidney
285
heart
160
vasculature
159
bone element
156
blood vessel
120
artery
96
brain
73
limb
63
musculature of body
58
blood
58
bodily fluid
57
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
46
GRCh38
44
hg19
Lab
96
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
histone
BIOSAMPLE
ASSAY
96 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
1
1
1
brain microvascular endothelial cell
1
1
1
choroid plexus epithelial cell
1
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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