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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
Assay category
107
DNA binding
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
31
control
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
3
October, 2019
2
August, 2021
1
May, 2019
1
November, 2017
Available data
105
bigWig
97
bed narrowPeak
95
bam
47
tagAlign
38
fastq
19
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
2
bed bed3+
Organism
107
Homo sapiens
Biosample type
306
tissue
107
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
67
AMP
40
T1D
Genome assembly (visualization)
105
hg19
95
GRCh38
Lab
57
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
RNA binding protein
organ_slims!
vasculature
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
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