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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
142
DNA binding
138
Transcription
43
DNA accessibility
3D chromatin structure
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
122
May, 2021
48
August, 2017
35
August, 2021
32
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
110
fastq
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
334
Homo sapiens
Biosample type
2458
tissue
956
primary cell
639
cell line
334
in vitro differentiated cells
9
stem cell
Organ
77
connective tissue
25
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
334
AMP
Genome assembly (visualization)
257
hg19
228
GRCh38
4
hg18
Lab
290
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
334 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
47
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
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