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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
12
single cell RNA-seq
10
snATAC-seq
6
ATAC-seq
2
FAIRE-seq
Assay category
74
Transcription
27
DNA methylation
18
DNA accessibility
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
307
August, 2021
302
August, 2017
254
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
100
July, 2019
88
November, 2018
79
December, 2017
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
54
March, 2020
53
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
34
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
82
bam
81
bigWig
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
2
bigBed narrowPeak
Organism
118
Homo sapiens
Biosample type
92
tissue
27
primary cell
Organ
25
heart
19
lung
17
connective tissue
15
brain
12
adipose tissue
11
epithelium
11
kidney
10
vasculature
9
blood vessel
9
liver
6
musculature of body
6
pancreas
3
artery
2
pericardium
1
eye
1
limb
Project
100
AMP
19
LungMap
Genome assembly (visualization)
87
hg19
79
GRCh38
Lab
100
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
target.investigated_as!
broad histone mark
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
119 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
single cell RNA-seq
snATAC-seq
ATAC-seq
FAIRE-seq
tissue
lung
9
10
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 16 more…
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