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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
62
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
92
histone
92
histone modification
broad histone mark
34
narrow histone mark
28
control
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
307
August, 2021
302
August, 2017
254
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
100
July, 2019
88
November, 2018
79
December, 2017
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
54
March, 2020
53
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
34
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
68
bam
44
bigWig
41
bed narrowPeak
40
bigBed narrowPeak
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
78
Homo sapiens
Biosample type
63
tissue
9
primary cell
6
cell line
Organ
28
blood vessel
28
vasculature
14
heart
13
brain
12
pancreas
9
epithelium
6
connective tissue
5
artery
3
kidney
3
limb
3
musculature of body
Project
78
AMP
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
68
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
target.investigated_as!
broad histone mark
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
thoracic aorta
9
ascending aorta
8
temporal lobe
7
angular gyrus
6
aorta
6
+ See 7 more…
primary cell
osteoblast
4
1
1
kidney epithelial cell
3
cell line
EndoC_BH1
6
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