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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
77
DNA accessibility
57
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
35
February, 2023
35
June, 2019
30
April, 2019
14
February, 2021
14
July, 2019
14
May, 2019
5
March, 2020
3
October, 2019
Available data
114
bed narrowPeak
104
bam
77
bigWig
60
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
150
Homo sapiens
Biosample type
127
tissue
14
cell line
9
primary cell
Organ
556
liver
389
pancreas
279
epithelium
214
kidney
192
brain
159
connective tissue
150
heart
124
vasculature
118
blood vessel
97
bone element
81
limb
70
adipose tissue
69
artery
69
blood
69
bodily fluid
67
musculature of body
42
eye
22
nerve
21
spleen
19
embryo
18
ureter
13
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
150
AMP
Genome assembly (visualization)
119
GRCh38
81
hg19
Lab
150
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
target.investigated_as!
broad histone mark
assay_slims!
Transcription
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
coronary artery
5
36
2
heart left ventricle
20
2
3
4
1
1
1
heart
6
18
1
1
heart right ventricle
6
1
2
1
1
right atrium auricular region
6
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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