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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
Assay category
436
Transcription
288
DNA accessibility
157
DNA binding
58
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
55
May, 2021
37
August, 2017
23
June, 2019
15
September, 2018
12
October, 2019
9
November, 2017
3
August, 2021
3
May, 2019
Available data
142
bam
129
bigWig
114
bed narrowPeak
61
fastq
49
tagAlign
36
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
2
bed bed3+
Organism
157
Homo sapiens
Biosample type
604
tissue
465
cell line
157
primary cell
142
in vitro differentiated cells
2
stem cell
Organ
61
epithelium
43
pancreas
14
vasculature
11
blood vessel
10
kidney
9
brain
8
connective tissue
8
vein
6
musculature of body
5
heart
3
eye
3
liver
Project
117
AMP
40
T1D
Genome assembly (visualization)
129
hg19
111
GRCh38
Lab
104
AMP-T2D consortium
53
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
primary cell
monocyte
41
CD8-positive, alpha-beta T cell
13
pancreatic endocrine cell
12
pancreatic alpha cell
10
pancreatic beta cell
10
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