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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
Assay category
481
Transcription
109
DNA binding
34
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
77
August, 2017
23
October, 2018
8
June, 2019
1
October, 2019
Available data
86
bam
78
fastq
59
bigWig
42
bed narrowPeak
11
bed bed3+
11
bigBed narrowPeak
10
tagAlign
1
bed broadPeak
Organism
109
Homo sapiens
Biosample type
54
tissue
47
in vitro differentiated cells
8
primary cell
Organ
510
liver
148
brain
140
pancreas
109
connective tissue
85
epithelium
77
heart
60
blood
60
bodily fluid
57
vasculature
54
blood vessel
53
adipose tissue
37
kidney
32
limb
20
artery
19
musculature of body
19
nerve
18
embryo
16
spleen
8
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
109
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
16
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
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in vitro differentiated cells
adipocyte
47
primary cell
cardiac fibroblast
5
mesenchymal stem cell
3
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