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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
32
ChIP-seq
8
ATAC-seq
7
total RNA-seq
Hi-C
1
WGBS
Assay category
44
DNA accessibility
32
DNA binding
7
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
39
October, 2019
32
June, 2019
6
February, 2021
3
February, 2020
3
May, 2019
1
July, 2019
Available data
80
bam
58
bed narrowPeak
57
bigWig
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
84
Homo sapiens
Biosample type
84
tissue
Organ
859
pancreas
745
liver
638
connective tissue
471
epithelium
470
adipose tissue
336
kidney
333
heart
213
brain
186
vasculature
180
blood vessel
127
artery
84
limb
75
bone element
70
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
84
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
assay_title!
RNA microarray
Hi-C
BIOSAMPLE
ASSAY
84 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
2
19
1
5
muscle of arm
17
muscle of leg
13
3
1
tibial artery
2
9
1
1
distal epiphysis of femur
1
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