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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
11
ChIP-seq
Assay category
14
Transcription
11
DNA binding
Target of assay
11
histone
11
histone modification
7
narrow histone mark
broad histone mark
3
transcription factor
1
control
Date released
8
August, 2021
8
December, 2017
7
February, 2018
2
May, 2021
Available data
25
bam
24
bigWig
15
fastq
14
tsv
10
bed narrowPeak
2
bed bed3+
Organism
25
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
Organ
564
pancreas
547
connective tissue
500
liver
421
adipose tissue
254
epithelium
208
heart
189
kidney
152
brain
150
vasculature
146
blood vessel
114
artery
66
bone element
62
limb
54
blood
54
bodily fluid
43
musculature of body
25
embryo
18
ureter
15
nerve
12
spleen
8
skeleton
7
vein
6
eye
1
pericardium
1
pituitary gland
Project
25
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
ChIP-seq
in vitro differentiated cells
pancreatic endoderm
4
9
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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