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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
70
ATAC-seq
5
FAIRE-seq
2
DNase-seq
Assay category
77
DNA accessibility
Date released
38
May, 2022
30
February, 2023
3
August, 2017
2
August, 2021
2
July, 2019
1
November, 2018
1
October, 2019
Available data
202
fastq
200
tsv
161
txt
153
zippedFastqFolder
103
bigWig
79
bam
77
bed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
10
bed bed3
10
bigBed narrowPeak
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
bed broadPeak
2
ibed
1
bedpe
1
bigBed broadPeak
1
tar
1
vcf
Organism
77
Homo sapiens
Biosample type
70
tissue
4
in vitro differentiated cells
3
primary cell
Organ
27
eye
20
liver
20
pancreas
13
epithelium
3
connective tissue
1
adipose tissue
1
blood vessel
1
brain
1
kidney
1
vasculature
1
vein
Project
77
AMP
Genome assembly (visualization)
GRCh38
370
hg19
Lab
35
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
assembly!
GRCh38
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver
20
islet of Langerhans
18
1
retina
15
pigmented layer of retina
12
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
primary cell
skeletal muscle myoblast
2
endothelial cell of umbilical vein
1
See all biosamples
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