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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
14
total RNA-seq
Assay category
18
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
broad histone mark
3
transcription factor
Date released
12
December, 2017
10
February, 2018
8
August, 2021
2
May, 2021
Available data
32
bam
24
bigWig
22
fastq
14
tsv
10
bed narrowPeak
2
bed bed3+
Organism
32
Homo sapiens
Biosample type
24
in vitro differentiated cells
8
cell line
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
32
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
hg18
Lab
32
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
assembly!
hg18
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
14
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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