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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
102
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
235
November, 2017
232
May, 2021
207
May, 2020
202
June, 2019
200
August, 2017
164
July, 2018
157
October, 2019
98
August, 2021
79
July, 2019
79
November, 2018
62
December, 2017
55
September, 2018
51
November, 2019
49
April, 2018
38
May, 2019
35
February, 2023
30
December, 2018
28
October, 2018
27
April, 2019
23
February, 2018
22
January, 2019
16
March, 2020
12
May, 2023
9
October, 2017
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
200
bam
200
fastq
198
bigWig
89
tsv
74
bed narrowPeak
27
bed bed3+
20
bigBed narrowPeak
9
bed broadPeak
7
bigBed broadPeak
7
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
198
Homo sapiens
Biosample type
137
tissue
37
in vitro differentiated cells
26
primary cell
Organ
128
pancreas
53
connective tissue
16
adipose tissue
12
liver
11
epithelium
Project
200
AMP
Genome assembly (visualization)
215
hg19
200
GRCh38
Lab
200
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
15
89
1
white adipose tissue
12
liver
11
pancreas
4
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
36
1
primary cell
pancreatic endocrine cell
8
skeletal muscle myoblast
7
pancreatic alpha cell
4
1
pancreatic beta cell
4
1
pancreatic acinar cell
1
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