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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
Assay category
47
DNA binding
Target of assay
54
histone
54
histone modification
29
narrow histone mark
broad histone mark
18
transcription factor
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
17
August, 2017
15
September, 2018
10
November, 2017
3
November, 2018
1
December, 2017
1
October, 2017
Available data
47
bam
47
fastq
45
bigWig
29
bed narrowPeak
13
bigBed narrowPeak
9
bed bed3+
1
bed broadPeak
1
tagAlign
Organism
47
Homo sapiens
Biosample type
23
primary cell
13
cell line
10
tissue
1
in vitro differentiated cells
Organ
32
pancreas
connective tissue
13
liver
12
adipose tissue
11
epithelium
1
brain
1
embryo
Project
47
AMP
Genome assembly (visualization)
45
hg19
38
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
47
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
target.investigated_as!
broad histone mark
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
cell line
HepG2
13
tissue
islet of Langerhans
9
brain
1
in vitro differentiated cells
pancreatic endoderm
1
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