Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
41
ChIP-seq
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
338
Transcription
136
DNA accessibility
47
DNA methylation
41
DNA binding
4
3D chromatin structure
Target of assay
85
histone
85
histone modification
broad histone mark
41
narrow histone mark
Date released
134
May, 2022
109
May, 2021
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
March, 2020
5
March, 2023
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
147
bigWig
137
bam
102
tsv
41
bed narrowPeak
40
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
583
Homo sapiens
Biosample type
485
primary cell
93
tissue
8
cell line
2
stem cell
Organ
179
pancreas
153
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
324
HPAP
193
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
148
GRCh38
140
hg19
Lab
324
Klaus Kaestner, Upenn
192
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
6
inconsistent ontology term
target.investigated_as!
broad histone mark
award.project!
AMP
month_released!
March, 2020
BIOSAMPLE
ASSAY
588 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
40
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 37 more…
tissue
kidney
47
islet of Langerhans
5
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download