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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
14
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
41
DNA accessibility
14
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
12
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
48
bed narrowPeak
22
bam
15
bigWig
11
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
cell line
59
tissue
2
primary cell
Organ
786
pancreas
640
connective tissue
471
adipose tissue
407
epithelium
357
liver
320
kidney
250
heart
216
brain
159
bone element
125
vasculature
119
blood vessel
88
limb
76
musculature of body
61
artery
61
eye
27
nerve
25
embryo
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
50
GRCh38
15
hg19
Lab
61
AMP-T2D consortium
target.investigated_as!
broad histone mark
biosample_type!
cell line
BIOSAMPLE
ASSAY
61 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
coronary artery
36
5
2
1
tibial artery
1
9
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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