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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
27
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
162
DNA accessibility
121
Transcription
27
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
14
May, 2023
13
April, 2019
12
October, 2019
11
July, 2019
8
February, 2021
3
December, 2019
3
May, 2019
Available data
160
bed narrowPeak
114
bam
104
bigWig
91
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
320
Homo sapiens
Biosample type
289
tissue
31
primary cell
cell line
Organ
786
pancreas
640
connective tissue
471
adipose tissue
407
epithelium
357
liver
320
kidney
250
heart
216
brain
159
bone element
125
vasculature
119
blood vessel
88
limb
76
musculature of body
61
artery
61
eye
27
nerve
25
embryo
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
273
AMP
47
KPMP
Genome assembly (visualization)
178
GRCh38
102
hg19
Lab
142
Katalin Susztak, Upenn
131
AMP-T2D consortium
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
target.investigated_as!
broad histone mark
biosample_type!
cell line
BIOSAMPLE
ASSAY
320 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
17
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
1
7
1
kidney epithelial cell
1
1
3
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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