Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
42
ChIP-seq
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
279
Transcription
105
DNA accessibility
47
DNA methylation
42
DNA binding
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
134
May, 2022
108
May, 2021
81
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
150
bigWig
140
bam
104
tsv
42
bed narrowPeak
40
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
494
Homo sapiens
Biosample type
485
primary cell
tissue
11
cell line
2
stem cell
Organ
156
epithelium
156
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
324
HPAP
169
T1D
4
community
1
ITG
Genome assembly (visualization)
151
GRCh38
143
hg19
Lab
324
Klaus Kaestner, Upenn
165
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
9
inconsistent ontology term
target.investigated_as!
broad histone mark
biosample_type!
tissue
award.project!
AMP
BIOSAMPLE
ASSAY
498 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
40
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 37 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download