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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
42
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
98
Transcription
42
DNA binding
8
DNA accessibility
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
108
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
3
March, 2020
Available data
140
bam
140
bigWig
98
tsv
42
bed narrowPeak
40
tagAlign
Organism
169
Homo sapiens
Biosample type
160
primary cell
tissue
9
cell line
Organ
8
blood
8
bodily fluid
4
epithelium
4
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
1458
AMP
324
HPAP
169
T1D
4
community
1
ITG
Genome assembly (visualization)
140
GRCh38
140
hg19
Lab
165
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
target.investigated_as!
broad histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
169 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
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cell line
EndoC_BH1
2
2
3
2
See all biosamples
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