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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
total RNA-seq
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
ChIP-seq
Assay category
47
Transcription
8
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
3
March, 2020
Available data
48
bam
48
bigWig
47
tsv
1
bed narrowPeak
Organism
61
Homo sapiens
Biosample type
53
primary cell
tissue
8
cell line
Organ
8
blood
8
bodily fluid
3
epithelium
3
pancreas
Project
1283
AMP
324
HPAP
61
T1D
4
community
1
ITG
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
58
Kyle Gaulton, UCSD
3
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
target.investigated_as!
broad histone mark
biosample_type!
tissue
month_released!
May, 2021
BIOSAMPLE
ASSAY
61 results
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total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
ChIP-seq
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
cell line
EndoC_BH1
2
3
2
1
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