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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
51
single cell RNA-seq
42
ChIP-seq
41
WGBS
39
ATAC-seq
29
snATAC-seq
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
153
Transcription
68
DNA accessibility
42
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
134
May, 2022
108
May, 2021
45
May, 2020
18
September, 2020
8
January, 2021
5
February, 2023
5
March, 2023
3
March, 2020
3
October, 2022
Available data
fastq
153
zippedFastqFolder
150
bigWig
140
bam
104
tsv
42
bed narrowPeak
40
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
325
Homo sapiens
Biosample type
316
primary cell
tissue
11
cell line
2
stem cell
Organ
87
epithelium
87
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
169
T1D
155
HPAP
4
community
1
ITG
Genome assembly (visualization)
143
hg19
141
GRCh38
Lab
165
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
target.investigated_as!
broad histone mark
biosample_type!
tissue
files.file_type!
fastq
award.project!
AMP
BIOSAMPLE
ASSAY
329 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
40
1
Langerhans cell
51
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
peripheral blood mononuclear cell
8
+ See 36 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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