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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
30
DNase-seq
21
snATAC-seq
Assay category
90
DNA accessibility
63
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
134
May, 2022
56
November, 2017
24
June, 2019
19
September, 2020
9
August, 2017
3
October, 2019
1
November, 2020
Available data
1329
bam
1223
bigWig
908
fastq
666
bed narrowPeak
524
tsv
443
bigBed narrowPeak
153
zippedFastqFolder
93
bed broadPeak
93
bigBed broadPeak
89
tagAlign
62
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
246
Homo sapiens
Biosample type
194
primary cell
tissue
51
cell line
1
in vitro differentiated cells
Organ
100
epithelium
81
pancreas
52
liver
11
brain
10
kidney
10
vasculature
7
connective tissue
6
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
Project
153
HPAP
93
AMP
Genome assembly (visualization)
86
hg19
78
GRCh38
Lab
153
Klaus Kaestner, Upenn
93
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
7
1
pancreatic acinar cell
4
+ See 22 more…
cell line
HepG2
50
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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