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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
766
ChIP-seq
496
total RNA-seq
271
ATAC-seq
141
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
141
Transcription
Target of assay
3
control
Date released
July, 2018
43
April, 2018
40
September, 2020
33
May, 2022
12
February, 2021
3
August, 2018
3
July, 2019
3
June, 2018
2
December, 2019
1
November, 2018
1
September, 2018
Available data
80
fastq
54
tsv
52
bam
52
bigWig
52
zippedFastqFolder
2
csv
Organism
141
Homo sapiens
Biosample type
tissue
139
primary cell
2
in vitro differentiated cells
Organ
37
epithelium
37
pancreas
3
brain
2
connective tissue
Project
85
HPAP
56
AMP
Genome assembly (visualization)
52
GRCh38
52
hg19
Lab
85
Klaus Kaestner, Upenn
56
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
2
audit script error
target.investigated_as!
broad histone mark
biosample_type!
tissue
month_released!
July, 2018
BIOSAMPLE
ASSAY
141 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
7
pancreatic delta cell
7
pancreatic ductal cell
7
pancreatic cell
6
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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