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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
447
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
447
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
306
November, 2017
95
February, 2021
61
November, 2018
27
December, 2018
25
October, 2019
23
January, 2019
9
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
564
bam
504
bigWig
419
fastq
387
bed narrowPeak
345
bigBed narrowPeak
119
tsv
51
bed broadPeak
51
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
564
Homo sapiens
Biosample type
1685
tissue
564
cell line
509
primary cell
254
in vitro differentiated cells
2
stem cell
Organ
358
liver
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
53
pancreas
45
epithelium
15
kidney
8
embryo
Project
560
AMP
4
T1D
Genome assembly (visualization)
492
hg19
447
GRCh38
Lab
564
AMP-T2D consortium
Audit category:
56
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
564 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
351
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
9
33
1
Panc1
9
1
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