Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
83
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
83
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
89
May, 2021
37
August, 2017
28
August, 2021
27
December, 2017
26
February, 2021
23
February, 2018
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
228
bam
218
bigWig
127
tsv
95
bed narrowPeak
87
fastq
21
bed bed3+
12
tagAlign
10
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
261
Homo sapiens
Biosample type
1557
tissue
512
cell line
510
primary cell
261
in vitro differentiated cells
2
stem cell
Organ
61
connective tissue
17
embryo
13
epithelium
7
liver
2
pancreas
1
heart
Project
261
AMP
Genome assembly (visualization)
261
hg19
228
GRCh38
4
hg18
Lab
249
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
108
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
261 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
36
8
1
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
9
+ See 30 more…
See all biosamples
Download