Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
157
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
288
DNA accessibility
157
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
101
May, 2022
100
May, 2020
85
May, 2021
47
June, 2019
43
August, 2017
35
February, 2021
29
September, 2018
20
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
September, 2017
3
August, 2021
3
May, 2019
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
257
bam
241
bigWig
183
bed narrowPeak
128
fastq
101
zippedFastqFolder
88
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
34
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
530
Homo sapiens
Biosample type
1227
tissue
530
primary cell
528
cell line
200
in vitro differentiated cells
7
stem cell
Organ
212
epithelium
164
pancreas
26
vasculature
25
kidney
20
blood vessel
20
connective tissue
18
brain
13
vein
9
heart
8
blood
8
bodily fluid
8
liver
8
musculature of body
5
eye
1
bone element
1
bone marrow
Project
318
AMP
147
HPAP
64
T1D
1
ITG
Genome assembly (visualization)
256
hg19
188
GRCh38
Lab
305
AMP-T2D consortium
147
Klaus Kaestner, Upenn
77
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
assay_slims!
Transcription
BIOSAMPLE
ASSAY
530 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
35
10
31
1
monocyte
15
41
1
1
pancreatic beta cell
23
10
16
1
Langerhans cell
48
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
+ See 71 more…
See all biosamples
Download