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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
114
ChIP-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
217
DNA accessibility
114
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
broad histone mark
84
narrow histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
85
May, 2021
47
June, 2019
29
February, 2021
21
May, 2022
20
October, 2019
13
July, 2019
12
August, 2017
12
February, 2023
9
November, 2017
8
January, 2021
3
August, 2021
3
May, 2019
2
November, 2020
1
March, 2020
1
March, 2023
Available data
192
bam
178
bigWig
138
bed narrowPeak
66
bigBed narrowPeak
49
tagAlign
47
fastq
41
bed broadPeak
41
bigBed broadPeak
34
bed bed3+
21
zippedFastqFolder
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
366
Homo sapiens
Biosample type
1074
tissue
479
cell line
366
primary cell
197
in vitro differentiated cells
7
stem cell
Organ
212
epithelium
pancreas
26
vasculature
25
kidney
20
blood vessel
20
connective tissue
18
brain
13
vein
9
heart
8
blood
8
bodily fluid
8
liver
8
musculature of body
5
eye
1
bone element
1
bone marrow
Project
253
AMP
64
T1D
48
HPAP
1
ITG
Genome assembly (visualization)
200
hg19
125
GRCh38
Lab
240
AMP-T2D consortium
77
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
1
ITG
Audit category:
35
inconsistent ontology term
28
audit script error
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
target.investigated_as!
broad histone mark
assay_slims!
Transcription
organ_slims!
pancreas
BIOSAMPLE
ASSAY
366 results
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ATAC-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
15
41
1
1
Langerhans cell
48
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
CD4-positive, alpha-beta memory T cell
22
CD8-positive, alpha-beta T cell
2
13
1
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