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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ATAC-seq
61
ChIP-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
Transcription
91
DNA accessibility
61
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
25
September, 2018
23
August, 2017
20
June, 2019
19
October, 2019
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2021
3
May, 2019
3
October, 2022
3
September, 2020
1
March, 2020
Available data
101
bam
92
bigWig
80
zippedFastqFolder
79
bed narrowPeak
75
fastq
54
bigBed narrowPeak
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
5
hic
4
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
212
Homo sapiens
Biosample type
212
primary cell
39
cell line
15
in vitro differentiated cells
13
tissue
Organ
212
epithelium
164
pancreas
26
vasculature
25
kidney
20
blood vessel
20
connective tissue
18
brain
13
vein
9
heart
8
blood
8
bodily fluid
8
liver
8
musculature of body
5
eye
1
bone element
1
bone marrow
Project
113
AMP
99
HPAP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
113
AMP-T2D consortium
99
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
4
audit script error
Audit category:
11
missing controlled_by
Audit category:
4
inconsistent control read length
target.investigated_as!
broad histone mark
assay_slims!
Transcription
BIOSAMPLE
ASSAY
212 results
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ATAC-seq
ChIP-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
35
10
31
1
pancreatic beta cell
23
10
16
1
pancreatic acinar cell
9
4
1
endothelial cell of umbilical vein
8
2
2
1
pancreatic ductal cell
4
7
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