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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
197
ATAC-seq
187
single cell RNA-seq
120
ChIP-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
283
DNA accessibility
120
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
199
histone
199
histone modification
broad histone mark
93
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
August, 2017
31
July, 2019
22
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
467
bam
465
bigWig
334
fastq
270
tsv
162
bed narrowPeak
153
zippedFastqFolder
75
bigBed narrowPeak
43
tagAlign
36
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
923
Homo sapiens
Biosample type
2243
tissue
923
primary cell
643
cell line
290
in vitro differentiated cells
9
stem cell
Organ
352
epithelium
288
pancreas
35
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
438
AMP
324
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
479
hg19
414
GRCh38
Lab
423
AMP-T2D consortium
324
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
15
missing controlled_by
target.investigated_as!
broad histone mark
month_released!
August, 2017
BIOSAMPLE
ASSAY
923 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
monocyte
54
15
41
1
1
pancreatic beta cell
21
22
12
16
1
exocrine cell
39
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