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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
32
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
35
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
3
May, 2019
Available data
80
bam
58
bed narrowPeak
57
bigWig
50
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
52
Homo sapiens
Biosample type
52
tissue
Organ
845
pancreas
737
liver
613
connective tissue
465
adipose tissue
460
epithelium
286
heart
261
kidney
181
brain
178
vasculature
174
blood vessel
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
42
musculature of body
31
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
52
AMP-T2D consortium
target.investigated_as!
broad histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
19
1
5
tibial artery
9
1
1
gastrocnemius medialis
1
4
muscle of leg
3
1
distal epiphysis of femur
1
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