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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
148
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
49
November, 2017
30
June, 2019
16
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
182
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
15
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
194
tissue
20
primary cell
Organ
862
pancreas
746
liver
637
connective tissue
474
epithelium
469
adipose tissue
335
kidney
308
heart
214
brain
189
vasculature
184
blood vessel
159
bone element
127
artery
87
limb
72
musculature of body
69
blood
69
bodily fluid
60
eye
33
embryo
27
nerve
20
lung
19
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
214
AMP
Genome assembly (visualization)
156
GRCh38
137
hg19
Lab
214
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
7
14
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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