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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
142
DNA binding
20
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
broad histone mark
31
control
Date released
83
October, 2019
43
November, 2017
14
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
178
bam
158
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
bigBed broadPeak
35
bed bed3+
22
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
174
Homo sapiens
Biosample type
164
tissue
10
primary cell
Organ
859
pancreas
691
liver
628
connective tissue
466
adipose tissue
460
epithelium
305
heart
260
kidney
176
vasculature
174
blood vessel
174
brain
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
41
musculature of body
33
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
174
AMP
Genome assembly (visualization)
114
GRCh38
107
hg19
Lab
174
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
files.file_type!
bigBed broadPeak
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
174 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
11
brain
7
1
1
1
substantia nigra
8
1
angular gyrus
8
caudate nucleus
7
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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