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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
45
ATAC-seq
20
ChIP-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
45
DNA accessibility
20
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
10
October, 2019
5
July, 2019
5
May, 2019
2
August, 2021
2
February, 2020
Available data
89
bam
72
bigWig
60
bed narrowPeak
59
tsv
11
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
125
Homo sapiens
Biosample type
66
cell line
56
tissue
3
primary cell
Organ
861
pancreas
694
liver
631
connective tissue
469
adipose tissue
460
epithelium
306
heart
261
kidney
178
brain
176
vasculature
174
blood vessel
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
43
musculature of body
33
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
111
GRCh38
77
hg19
Lab
125
AMP-T2D consortium
target.investigated_as!
broad histone mark
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
125 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
tibial artery
1
1
9
pulmonary artery
2
pericardium
1
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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