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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
Assay category
DNA accessibility
78
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
17
August, 2017
1
October, 2017
Available data
2625
bam
2392
bigWig
1586
tsv
1138
fastq
905
bed narrowPeak
559
bigBed narrowPeak
251
tagAlign
157
txt
93
zippedFastqFolder
78
bed broadPeak
63
bigBed broadPeak
52
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
76
Homo sapiens
Biosample type
50
cell line
15
tissue
13
primary cell
Organ
50
liver
11
brain
5
musculature of body
4
epithelium
4
pancreas
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
78
AMP
Genome assembly (visualization)
78
hg19
55
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
cell line
HepG2
50
tissue
skeletal muscle tissue
5
islet of Langerhans
2
pancreas
2
brain
1
caudate nucleus
1
+ See 4 more…
primary cell
skeletal muscle myoblast
7
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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