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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
23
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
14
November, 2017
10
August, 2017
1
March, 2019
Available data
427
bam
405
fastq
203
bigWig
200
tsv
161
txt
153
zippedFastqFolder
152
bed narrowPeak
107
tagAlign
44
bigBed narrowPeak
25
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
15
bigBed broadPeak
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
25
Homo sapiens
Biosample type
13
cell line
10
tissue
2
primary cell
Organ
13
liver
5
musculature of body
3
pancreas
1
adipose tissue
1
brain
1
connective tissue
Project
25
AMP
Genome assembly (visualization)
262
hg19
GRCh38
Lab
24
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent control read length
target.investigated_as!
broad histone mark
assembly!
GRCh38
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
13
tissue
skeletal muscle tissue
5
islet of Langerhans
2
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
primary cell
skeletal muscle myoblast
1
1
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