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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
384
DNA binding
28
DNA accessibility
Target of assay
329
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
242
November, 2017
51
November, 2018
40
December, 2017
27
May, 2020
20
May, 2022
15
August, 2021
11
August, 2017
3
October, 2019
2
June, 2019
1
February, 2021
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
412
Homo sapiens
Biosample type
300
cell line
100
tissue
7
in vitro differentiated cells
5
primary cell
Organ
412
liver
168
kidney
146
pancreas
142
brain
114
heart
111
epithelium
92
vasculature
88
blood vessel
60
artery
59
connective tissue
58
limb
54
blood
54
bodily fluid
44
musculature of body
33
eye
18
ureter
13
adipose tissue
11
nerve
10
embryo
10
spleen
8
bone element
8
skeleton
8
vein
1
pituitary gland
Project
412
AMP
Genome assembly (visualization)
408
hg19
339
GRCh38
Lab
379
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
412 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
299
1
tissue
liver
72
20
2
right lobe of liver
4
1
1
in vitro differentiated cells
hepatocyte
7
primary cell
hepatocyte
2
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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