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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
59
ChIP-seq
Assay category
195
DNA accessibility
59
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
52
November, 2017
9
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2874
bam
2630
bigWig
1532
tsv
1305
bed narrowPeak
1234
fastq
758
bigBed narrowPeak
271
bed broadPeak
254
bigBed broadPeak
248
bed bed3+
245
tagAlign
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
254
Homo sapiens
Biosample type
171
tissue
51
cell line
31
primary cell
1
in vitro differentiated cells
Organ
78
kidney
55
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
vasculature
11
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
254
AMP
Genome assembly (visualization)
239
GRCh38
232
hg19
Lab
254
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
organ_slims!
vasculature
BIOSAMPLE
ASSAY
254 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
50
Panc1
1
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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