Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
678
ChIP-seq
123
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
678
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
307
November, 2017
196
August, 2017
87
November, 2018
79
December, 2017
47
October, 2018
35
December, 2018
31
February, 2018
26
January, 2019
24
May, 2022
11
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2505
bam
2227
bigWig
1330
tsv
1194
bed narrowPeak
864
fastq
712
bigBed narrowPeak
245
bed broadPeak
228
bigBed broadPeak
225
bed bed3+
202
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
861
Homo sapiens
Biosample type
419
cell line
primary cell
332
tissue
110
in vitro differentiated cells
3
stem cell
Organ
440
liver
188
pancreas
86
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
23
embryo
20
spleen
12
epithelium
6
brain
2
musculature of body
Project
864
AMP
Genome assembly (visualization)
698
hg19
639
GRCh38
5
hg18
Lab
838
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
41
missing controlled_by
Audit category:
36
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
864 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
352
5
1
1
GM12878
60
tissue
islet of Langerhans
22
103
20
1
1
liver
60
2
1
1
body of pancreas
22
4
2
2
spleen
16
1
1
2
omental fat pad
11
1
1
+ See 8 more…
in vitro differentiated cells
adipocyte
41
1
pancreatic endoderm
14
4
1
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
hepatocyte
8
+ See 7 more…
stem cell
hESC
2
1
See all biosamples
Download